Omid Haji-Ghassemi, PhD
PhD - BiochemistryUniversity of Victoria 2015
BSc Honours - Microbiology
University of Victoria 2009

Areas of Research
Protein kinases are the molecular time keepers of the cell. By transferring a phosphoryl group onto specific residues, they can nudge an enzyme into overdrive, silence an entire signaling cascade, or finely recalibrate the behavior of a membrane channel. Because phosphorylation touches nearly every physiological process - from the millisecond precision of neuronal firing to the rhythmic contraction of cardiac muscle - the stakes are enormous when these reactions go awry. Mistimed or excessive phosphorylation is increasingly recognized as a root cause of neurodegeneration, cancer, and inherited heart disease. Our laboratory asks how understudied kinases and calcium sensing proteins shape the function of ion channels and adaptor proteins at neuronal, muscular, and neuromuscular junctions. By focusing on gatekeepers such as NaV1.5 and NaV1.7, we aim to understand how phosphorylation and Ca²⁺ signals converge to control electrical excitability and how their mis-regulation leads to pain syndromes or arrhythmias. To uncover these mechanisms we blend complementary, high precision biophysical techniques. X ray crystallography and single particle cryo electron microscopy reveal atomic level snapshots of kinases and ion channel complexes, while isothermal titration calorimetry dissects the thermodynamic forces that drive their interactions. Binding kinetics and affinities are captured with bio layer interferometry and microscale thermophoresis, and circular dichroism spectroscopy safeguards the structural integrity of engineered mutants. Enzymatic assays, both radioactive and fluorescence coupled, translate these structural insights into quantitative measures of catalytic efficiency and inhibitor potency, completing a rigorous structure-function loop. Our long term objective is to turn fundamental understanding into practical benefits. High resolution structures highlight hidden allosteric pockets for structure based drug design, and detailed energetic maps guide the creation of site directed mutants and designer peptides that modulate kinase or channel activity with surgical precision. By marrying structural snapshots to quantitative biophysics, we aim to provide blueprints for next generation therapeutics that restore balanced phosphorylation and calcium signaling in disorders of the nervous system, heart, and skeletal muscle.
Supervising degrees
More information
Working with this supervisor
The ideal candidate would be a curious and highly motivated undergraduate or master student with degree completed in Biochemistry, Molecular Biology, Chemistry or Physical Chemistry or other closely related disciplines. Prior experience with molecular biology techniques, protein biochemistry/structural biology is desired, but not critical. Though applicants with prior research experience are preferred.
Selected publications († denotes equal contribution)
1. Haji-Ghassemi O, Chen YS, Woll K, Gurrola GB, Valdivia CR, Cai W, Li S, Valdivia HH, Van Petegem F. Cryo-em analysis of scorpion toxin binding to ryanodine receptors reveals subconductance that is abolished by pka phosphorylation. Sci Adv. 2023
2. Haji-Ghassemi O, Yuchi ZG, Van Petegem F. The cardiac ryanodine receptor phosphorylation hotspot embraces pka in a phosphorylation-dependent manner. Mol Cell. 2019
3. Ma RF†, Haji-Ghassemi O†, Ma D†, Jiang H†, Lin LY, Yao L, Samurkas A, Li YX, Wang YW, Cao P, Wu SA, Zhang Y, Murayama T, Moussian B, Van Petegem F, Yuchi ZG. Structural basis for diamide modulation of ryanodine receptor. Nat Chem Biol. 2020
4. Woll AK†, Haji-Ghassemi O†, Van Petegem F. Pathological conformations of disease mutant ryanodine receptors revealed by cryo-em. Nat Commun. 2020
5. Haji-Ghassemi O, Müller-Loennies S, Rodriguez T, Brade L, Kosma P, Brade H, Evans SV. Structural basis for antibody recognition of lipid a: Insights to polyspecificity toward single stranded DNA. J Biol Chem. 2015
6. Haji-Ghassemi O, Muller-Loennies S, Rodriguez T, Brade L, Grimmecke HD, Brade H, Evans SV. The combining sites of anti-lipid a antibodies reveal a widely-utilized motif specific for negatively charged groups. J Biol Chem. 2016
7. Haji-Ghassemi O, Gagnon SML, Muller-Loennies S, Evans SV. Polyspecificity of anti-lipid a antibodies and its relevance to the development of autoimmunity. Adv Exp Med Biol. 2017
8. Haji-Ghassemi O, Gilbert M, Spence J, Schur MJ, Parker MJ, Jenkins ML, Burke JE, van Faassen H, Young NM, Evans SV. Molecular basis for recognition of the cancer glycobiomarker, lacdinac (galnac[1->4]glcnac), by wisteria floribunda agglutinin. J Biol Chem. 2016
For full list of publications:
https://scholar.google.ca/citations?user=VutXY1QAAAAJ&hl=en&inst=14222159263353343293